By Angela Royston
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Transposons are quiescent in the genomes of most natural races of C. elegans, but can be activated in various mutant backgrounds and they are also actively transposing in the Bergerac race of C. elegans and its derivatives. As a result, the Tc1 copy number in the Bergerac race has increased from the normal 30-odd copies to several hundred copies, with some concomitant deleterious effects on the viability and fertility of the worms in this race. The transposon-active strains have been historically useful in providing many polymorphic molecular markers, and in allowing transposon-tagging and cloning of important genes.
Elegans with M. nematophilum. Genome Res 16:1005–1016 Piano F, Gunsalus KC, Hill DE, Vidal M (2006) C. elegans network biology: a beginning. In: WormBook. org Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86–94 Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C.
It not only proved useful in aiding the annotation of both genes and regulatory regions (Berman et al. 2004), but also provided a first detailed insight into the reshuffling of genes. There are almost 1,000 syntenic blocks shared between D. melanogaster and D. pseudoobscura, genomic regions which 37 have not retained their order on the chromosomes relative to each other. Comparative studies on primates in the 1970s suggested that the differences in species may stem from differences in their regulatory regions and not their proteins alone (King and Wilson 1975).